not best k value found
0
0
Entering edit mode
11 months ago

i am running kmergenie to estimate best k, however i am ending up with this error.

DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources running histogram estimation list of reads: /media/gyanlab/D/shailesh/Frogs/X201SC22082726-Z01-F002/01.RawData/Meg3/error_corrected/Meg3_read1.fq.gz /media/gyanlab/D/shailesh/Frogs/X201SC22082726-Z01-F002/01.RawData/Meg3/error_corrected/Meg3_read2.fq.gz Setting maximum kmer length to: 150 bp computing histograms (from k=21 to k=121): 101 111 121 91 81 71 61 51 41 31 21 ntCard wall-clock time over all k values: 2497 seconds fitting model to histograms to estimate best k could not fit histograms-k91.histo could not fit histograms-k81.histo could not fit histograms-k61.histo could not fit histograms-k111.histo could not fit histograms-k121.histo could not fit histograms-k101.histo could not fit histograms-k21.histo could not fit histograms-k71.histo could not fit histograms-k41.histo could not fit histograms-k51.histo could not fit histograms-k31.histo could not predict a best k value No best k found

de assemblly assembly novo kmergenie • 299 views
ADD COMMENT

Login before adding your answer.

Traffic: 853 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6