Comparison of the binding angles of Pembrolizumab (in green) and Pemfauxlizumab (in blue) bound to PD-1 (in purple).

• Run hallucinate.ipynb notebook.

• Run the steps in data_prep.md.

• AlphaFold2-based hallucinations were performed with ColabDesign, created by Sergey Ovchinnikov
• HADDOCK 2.4 docking system in Docker: https://github.com/colbyford/HADDOCKer/tree/main/HADDOCK2.4
• Protein images were made using: https://3dproteinimaging.com/protein-imager/