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haphic pipeline

Status: Open.

#102 In zengxiaofei/HapHiC;

· tky199996 opened on Jan 25, 2025

Missing juicebox.sh | YaHS

Status: Open.

#100 In zengxiaofei/HapHiC;

· RozimovAkbarjon opened on Jan 15, 2025

about haphic reassign

Status: Open.

#99 In zengxiaofei/HapHiC;

· mikeqiu00 opened on Jan 8, 2025

diploid, haplotype genome, output result

Status: Open.

#98 In zengxiaofei/HapHiC;

· jinhua2024 opened on Jan 7, 2025

Can not find contig ptg000001l in the gfa file(s). Maybe the gfa file(s) does not match the fasta file

Status: Open.

#97 In zengxiaofei/HapHiC;

· zhulicui opened on Jan 3, 2025

Is it possible to scaffolding with other individual HiC data?

Status: Open.

#95 In zengxiaofei/HapHiC;

· YPGG1234 opened on Dec 18, 2024

Limited valid data size of filtered BAM file in phased polyploid assembly

Status: Open.

#86 In zengxiaofei/HapHiC;

· Axolotl233 opened on Oct 30, 2024

[p_utg] Stange Hi-C maps after diploid scaffolding from polished hifiasm unitigs

Status: Open.

#85 In zengxiaofei/HapHiC;

· Isoris opened on Oct 24, 2024

[Hi-C maps] How to manage heterotype duplications?

Status: Open.

#83 In zengxiaofei/HapHiC;

· Isoris opened on Oct 22, 2024

OverflowError: signed integer is greater than maximum

enhancementNew feature or requestNew feature or request

Status: Open.

#81 In zengxiaofei/HapHiC;

· lstxmu opened on Oct 14, 2024

Important: More information allows me to grasp your issue faster

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#32 In zengxiaofei/HapHiC;

· zengxiaofei opened on Jun 14, 2024

BED file support

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In zengxiaofei/HapHiC;

· amvarani opened on May 10, 2024