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Achievements

Achievement: Pull SharkAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell MIT License Updated Nov 2, 2024

  • furo Public

    Forked from pradyunsg/furo

    A clean customizable documentation theme for Sphinx

    Sass MIT License Updated Oct 28, 2024

  • SpaTopic Public

    An R package for fast topic inference to identify tissue architecture in multiplexed images

    R 3 GNU General Public License v3.0 Updated Oct 17, 2024

  • MIF Public

    R codes for statistical analysis on whole-slide multiplexed imaging data for melanoma patients.

    R Apache License 2.0 Updated Sep 6, 2024

  • metacell Public

    Forked from tanaylab/metacell

    Metacell - Single-cell mRNA Analysis

    R Other Updated Apr 10, 2024

  • topic_modeling Public

    Latent Dirichlet Allocation with application on Longitudinal Flow Cytometry Data

    R 3 Updated Nov 25, 2023

  • AmpliCI-UMI Public

    AmpliCI with UMI information

    C 1 1 BSD 3-Clause "New" or "Revised" License Updated Oct 26, 2023

  • LDA_examples Public

    This folder contains all files for the github pages.

    Updated Aug 4, 2023

  • RcppArmadillo Public

    Forked from RcppCore/RcppArmadillo

    Rcpp integration for the Armadillo templated linear algebra library

    C++ Updated Apr 12, 2023

  • Microbiome-16S Public

    R codes for statistical analysis on microbiome 16S Amplicon Data

    R 2 Updated Jul 17, 2020

  • AmpliCI Public

    Forked from DormanLab/AmpliCI

    AmpliCI, a model-based algorithm for denoising Illumina amplicon data.

    C BSD 3-Clause "New" or "Revised" License Updated May 14, 2020

  • rna-seq-tsne Public

    Forked from berenslab/rna-seq-tsne

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook Updated Jan 24, 2020

  • raw_loess Public

    Updated Jan 19, 2020

  • rmath Public

    Forked from statslabs/rmath

    The R Standalone Math Library with modern CMake support

    C GNU General Public License v2.0 Updated Apr 2, 2019

  • minimap2 Public

    Forked from lh3/minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    C Other Updated Feb 5, 2019

  • kallisto Public

    Forked from pachterlab/kallisto

    Near-optimal RNA-Seq quantification

    C BSD 2-Clause "Simplified" License Updated Jan 18, 2019

  • MCMC Public

    MCMC for Hierarchical possion models

    R Updated Apr 11, 2017

  • HMM-model-for-Mi-seq Public

    Baum Welch algorithm to solve the HMM model for Mi-seq data

    Python Updated Apr 11, 2017

  • motif Public

    Use Branch And Bound Strategy to find motif of several DNA sequences

    Java GNU General Public License v3.0 Updated Oct 27, 2016

  • SSCO Public

    Find the genes involved in start-stop codon overlaping in prokaryotic genome

    Python 1 Updated Oct 26, 2016