Nextflow pipeline for Mutect2 somatic variant calling best practices

secondary analysis pipelines parallelized with apache spark

GATK 4 Mutect2 Somático

This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)

Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

demo pipeline for testing different data chunking methods for MuTect2

유전체 데이터 돌연변이 분석

A Snakemake pipeline for copy number variant calling without normal tissue samples