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australian-biocommons

Here are 3 public repositories matching this topic...

AustralianBioCommons / Nextflow_DSL2_template

Template for creating Nextflow DSL2 pipelines

template workflow bioinformatics pipeline nextflow reproducibility workflows nextflow-pipeline dsl2 australian-biocommons

Updated May 22, 2024

Sydney-Informatics-Hub / Germline-StructuralV-nf

Germline structural variant calling pipeline for short read WGS datasets

workflow bioinformatics pipeline genomics nextflow ngs manta bam survivor structural-variants smoove tiddit germline-variant-calling annotsv dsl2 australian-biocommons

Updated Oct 23, 2024
Nextflow

Sydney-Informatics-Hub / bamQC-nf

Report summary statistics relating to quality of bam files with Nextflow

bioinformatics genomics nextflow ngs alignment multiqc sambamba bam samtools qualimap mosdepth australian-biocommons

Updated Dec 6, 2022
Nextflow

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