A curated list of projects, templates or anything interesting related to the Supernote tablet

The ImageJ framework for quantification of neuronal anatomy

HortaCloud - 3D annotation platform for large microscopy data

A Java API for 3d and 2d charts

A free and open source code snippets manager for developers

Create plots in SciJava user interfaces

FlatLaf - Swing Look and Feel (with Darcula/IntelliJ themes support)

Test some ImgLib2 code

Companion repository for Arshadi et al. 2020

Scripts for visualizing SWC files in Blender

BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Guide to securing and improving privacy on macOS

Extended SWC neuron morphology file format

Framework for creating 3d neuronal morphologies from point/diameter descriptions.

A script for processing .trace file from ImageJ / Simple Neurite Tracer.

This repository contains the software developed for a plugin in imageJ for aligning biomedical imaging data.

A repository of freely available SVG drawings for your publications, presentations etc.

The NeuroMorph analysis and visualization toolkit

Tools for spike data analysis and visualization

The best fork of the best lightweight, visual git client for macOS.

KNIME Image Processing Extension

ImageJ core data model

KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.

Collaborative Annotation Toolkit for Massive Amounts of Image Data

🔬 Online Reconstruction and functional Imaging Of Neurons: segmentation and tracing of neurons for reconstruction

Software package for neuron reconstruction and visualization