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Schaefer parcellation update from 2019 #119

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doritdorit opened this issue Jan 14, 2022 · 2 comments
Open

Schaefer parcellation update from 2019 #119

doritdorit opened this issue Jan 14, 2022 · 2 comments

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@doritdorit
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Are the Schaefer labels/parcels updated according to https://github.com/ThomasYeoLab/CBIG/blob/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/Updates/Update_20190916_README.md ?

@cookpa
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cookpa commented Feb 15, 2022

I had the same question and I believe they are not, at least in the MNI152NLin2009cAsym space.

The Schaefer team provide CSV files with all updates here

https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/Updates

I looked at Update_20190916_component_name_changes.csv and for example, 400Parcels_17Networks parcel 65 "17Networks_LH_DorsAttnA_SPL_1" becomes "17Networks_LH_DorsAttnA_ParOcc_2".

But in tpl-MNI152NLin2009cAsym_atlas-Schaefer2018_desc-400Parcels17Networks_dseg.tsv parcel 65 is still referred to as "17Networks_LH_DorsAttnA_SPL_1".

@tsalo
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tsalo commented Jan 11, 2023

Should the updated Schaefer atlases be added to templateflow as new atlases, or should the old ones in templateflow just be replaced with the new ones?

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