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Issues list

Benefits of using S4D?
#6 by aga-relation was closed Jan 9, 2023
1
GPN for covid genome
#9 by smruti241 was closed May 18, 2023
1
Variant effect prediction analysis
#10 by smruti241 was closed Jul 28, 2023
1
Why Bidirectional LLR Calculation and Averaging
#21 by yangzhao1230 was closed Jan 31, 2024
1
the Increased Number of Entries in the Updated VEP Dataset on Hugging Face
#25 by yangzhao1230 was closed Mar 4, 2024
1
Develop a VEP for non-human organisms
#28 by biojiangke was closed May 24, 2024
1
GPN-SS pre-train process
#29 by Ssupercoder was closed Jul 23, 2024
1
VEP.ipynb scoring
#30 by Anshullllllll was closed Aug 26, 2024
1
ignore_data_skip error
#2 by liuyq123 was closed Oct 12, 2022
2
ConnectionError: Couldn't reach 'results/dataset' on the Hub (ConnectionError)
#12 by dahaigui was closed Nov 29, 2023
2
How can I specify the GPU to run the program?
#13 by dahaigui was closed Nov 29, 2023
2
Discrepancy in ClinVar Pathogenic Variant Counts: Paper vs. Hugging Face Dataset
#20 by yangzhao1230 was closed Jan 31, 2024
2
Cannot run vep.ipynb (variant effect prediction)
#22 by raphaelmourad was closed Feb 5, 2024
2
How to generate the missing output files
#8 by wokkel was closed Apr 29, 2023
3
Tokenizer for gpn-msa-sapiens
#15 by IandRover was closed Dec 1, 2023
3
Loss weighting behavior will give inconsistent "upweighting" between batches
#23 by yair-schiff was closed Feb 19, 2024
3
Data used for computing perplexity
#7 by liuyq123 was closed Jan 16, 2023
4
Calculation of AUPRC in GPN-MSA Figure 2b
#26 by yangzhao1230 was closed Mar 14, 2024
4
Questions about reproducing results in the manuscript
#31 by HelloWorldLTY was closed Sep 16, 2024
4
Get error when downloading vep data
#1 by liuyq123 was closed Jan 16, 2023
5
Use multiple GPUs for training
#3 by liuyq123 was closed Oct 19, 2022
6
Do you have pre-trained GPN for different genomes?
#4 by gdolsten was closed Jul 28, 2023
8
Question about Model
#5 by gdolsten was closed Dec 9, 2022
11
Help with alternative set up
#11 by Michal-Babins was closed Sep 2, 2023
11
IndexError: tuple index out of range
#16 by dahaigui was closed Dec 4, 2023
12
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