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roux Public
🧰Convenient functions in Python.
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chrov Public
🧬Chromosome Visualizations
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pairtree Public
Forked from morrislab/pairtreePairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples a…
Python MIT License UpdatedOct 10, 2024 -
rnaseq-1 Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedOct 4, 2024 -
pandas Public
Forked from pandas-dev/pandasFlexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 2, 2024 -
fastq-dl Public
Forked from rpetit3/fastq-dlDownload FASTQ files from SRA or ENA repositories.
Python MIT License UpdatedSep 26, 2024 -
vep_pipeline Public
Forked from CERC-Genomic-Medicine/vep_pipelinePipeline for variant annotation using Variant Effect Predictor (VEP)
Jupyter Notebook UpdatedSep 4, 2024 -
pyensembl Public
Forked from openvax/pyensemblPython interface to ensembl reference genome metadata
Python Apache License 2.0 UpdatedSep 3, 2024 -
quarto-examples Public
Forked from quarto-dev/quarto-examplesA repository of self-contained quarto examples
R UpdatedJul 16, 2024 -
parag Public
parag🎆Interactive visualization of higher-order graphs in Python
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beditor Public
A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more
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FLEX_R Public
Forked from csbio/FLEX_RFunctionaL Evaluation of eXperimental perturbation (i.e. genome wide knockout) screens
R GNU General Public License v3.0 UpdatedMay 26, 2024 -
GNN-Benchmark Public
Forked from xhuang2016/GNN-BenchmarkCharacterizing the Efficiency of Graph Neural Network Frameworks with a Magnifying Glass
Python UpdatedMay 26, 2024 -
cellpose Public
Forked from MouseLand/cellposea generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 26, 2024 -
cellstar Public
Forked from Fafa87/cellstarAlgorithm for round cells identification in the brightfield microscopy images.
Python UpdatedMay 26, 2024 -
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safepy Public
Forked from baryshnikova-lab/safepyPython implementation of Spatial Analysis of Functional Enrichment (SAFE)
Python GNU General Public License v3.0 UpdatedMay 26, 2024 -
awesome-CRISPR Public
Forked from davidliwei/awesome-CRISPRList of software/websites/databases/other stuff for genome engineering
MIT License UpdatedMay 14, 2024 -
awesome-biological-image-analysis Public
Forked from hallvaaw/awesome-biological-image-analysisA curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Creative Commons Zero v1.0 Universal UpdatedApr 16, 2024 -
awesome-datascience Public
Forked from academic/awesome-datascience📝 An awesome Data Science repository to learn and apply for real world problems.
MIT License UpdatedApr 2, 2024 -
awesome-python-data-science Public
Forked from krzjoa/awesome-python-data-scienceProbably the best curated list of data science software in Python.
Creative Commons Attribution 4.0 International UpdatedApr 2, 2024 -
Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
UpdatedApr 2, 2024 -
awesome-biological-visualizations Public
Forked from keller-mark/awesome-biological-visualizationsA list of web-based interactive biological data visualizations.
Creative Commons Zero v1.0 Universal UpdatedApr 2, 2024 -
awesome-network-analysis Public
Forked from briatte/awesome-network-analysisA curated list of awesome network analysis resources.
R UpdatedApr 2, 2024 -
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sgatools Public
Forked from boonelab/sgatoolsFor the analysis and visualization of array-based genetic interaction screens
Jupyter Notebook UpdatedMar 4, 2024 -
dseq Public
dseq: Deep sequencing analysis in dataframes
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pytorch_geometric Public
Forked from pyg-team/pytorch_geometricGraph Neural Network Library for PyTorch
Python MIT License UpdatedJan 31, 2024 -
pyfaidx Public
Forked from mdshw5/pyfaidxEfficient pythonic random access to fasta subsequences
Python Other UpdatedJan 17, 2024