Merge pull request #71 from pinellolab/v216

Release v2.1.6

Merge pull request #61 from pinellolab/test-error-tracing-grep

Test error tracing grep

Merge pull request #56 from pinellolab/test-commandline

add default parameters for crisprme test functionality

Merge pull request #56 from pinellolab/test-commandline

add default parameters for crisprme test functionality

Merge pull request #47 from pinellolab/fix-onlyref-search

Fix onlyref search

Merge pull request #27 from pinellolab/trace_errors_search

Trace errors search

Merge pull request #19 from pinellolab/thread_limit_removal

Thread limit removal

Merge pull request #12 from pinellolab/bed-seq-input-handling

add modal warning with bad BED-like guide input is given

update to PAM file when using crisprme web-interface command

fix bug in indels and snp analysis with misaligned targets