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31 repositories
AutoPM3
PublicClair3-Nova
PublicClairS
PublicClairS - a deep-learning method for long-read somatic small variant callingClairS-TO
PublicClairS-TO - a deep-learning method for tumor-only somatic variant callingClair3-RNA
PublicClair3-RNA - a long-read small variant caller for RNA sequencing dataClair3
PublicClair3 - Symphonizing pileup and full-alignment for high-performance long-read variant callingmsdb-flask
PublicCellContrast
PublicCellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive LearningClair3-Trio
Public archiveClair3-Trio: variant calling in trio using Nanopore long-readsClusterV-Web
PublicClusterV
PublicClusterV: finding HIV quasispecies and drug resistance from ONT sequencing dataClair3-MP
PublicSENSV
PublicTC-RENO
PublicCPG
PublicAF-NS
PublicONT-TB-NF
PublicComprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.CONNET
PublicCONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep LearningClair
PublicClair: Exploring the limit of using deep neural network on pileup data for germline variant callingMegaPath-Nano
PublicMegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon dataECNano
PublicMegaPath
PublicMegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon dataHKG
PublicChromatin-Fiber-Imaging
PublicChromSeg
PublicUNCALLED
PublicTranslocator
PublicClairvoyante-PyTroch
PublicMegaGTA
Public