Code

Merge fast processes#259

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Merged

nvnieuwk merged 26 commits intodevnf-cmgg/germline:devfrom merge-fast-processesnf-cmgg/germline:merge-fast-processesCopy head branch name to clipboardJan 27, 2025

+728-1,746

Commits

Commits on Jan 22, 2025

• fix vep workflow inefficiency

  nvnieuwk

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  8181975

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• fix an issue with the vep subwf

  nvnieuwk

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  3b77dc8

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Commits on Jan 23, 2025

• fix vcfanno output

  nvnieuwk

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  00d1d00

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• update filter subworkflow

  nvnieuwk

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  df05e7d

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• update ped filter subwf

  nvnieuwk

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  5af2749

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• remove all tabix from vcf_annotation

  nvnieuwk

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  465d7b2

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• remove tabix from concat subwf

  nvnieuwk

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  8f1380e

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• remove tabix from vcfanno subwf

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  afdbd04

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• remove mentions of tabix in subwfs

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  3d144c4

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• bye bye unused tabix modules

  nvnieuwk

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  15c34c7

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• fix linting

  nvnieuwk

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  0736854

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• Merge branch 'dev' into merge-fast-processes

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  dcb5e73

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• Merge branch 'dev' into merge-fast-processes

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  74ff865

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• bump to dev

  nvnieuwk

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  912a7a2

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• merge filter_beds and bedtools_intersect into process_beds

  nvnieuwk

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  cea2dfe

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• fix first batch of tests

  nvnieuwk

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  0079ac4

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• fix tests part2

  nvnieuwk

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  51a9333

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• fix linting

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  e1637d0

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• fix more tests

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  1e47527

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• fix one more test

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  a081dd9

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Commits on Jan 24, 2025

• bump vep

  nvnieuwk

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  cc2c294

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• fix vep stub

  nvnieuwk

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  eeb3358

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• merge filter steps

  nvnieuwk

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  14f5d02

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• fix linting

  nvnieuwk

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  ff36dcb

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• fix vep snap

  nvnieuwk

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  6646aa9

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• update changelog

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  6836a7a

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