networkbiology-graphml
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Logical_modelling_pipeline
Logical_modelling_pipeline PublicForked from sysbio-curie/Logical_modelling_pipeline
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in …
R
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DeepCE
DeepCE PublicForked from pth1993/DeepCE
A deep learning framework for high-throughput mechanism-driven phenotype screening
Python
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drugEmbedding
drugEmbedding PublicForked from batmanlab/drugEmbedding
Hierarchical Embedding for Drugs
Jupyter Notebook
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DRPreter
DRPreter PublicForked from babaling/DRPreter
DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
Python
Repositories
- linear_perturbation_prediction-Paper Public Forked from const-ae/linear_perturbation_prediction-Paper
networkbiology-graphml/linear_perturbation_prediction-Paper’s past year of commit activity - PertKGE Public Forked from myzhengSIMM/PertKGE
Identifying compound-protein interactions with knowledge graph embedding of perturbation transcriptomics
networkbiology-graphml/PertKGE’s past year of commit activity - openmeasurement_database Public Forked from wagenrace/openmeasurement_database
https://medium.com/neo4j/create-a-graph-of-chemical-reactions-fe2e6feebdb4
networkbiology-graphml/openmeasurement_database’s past year of commit activity - TAT Public Forked from Novartis/TAT
Transcriptomics-to-Activity Transformer (TAT) is a deep learning model to predict compound bioactivity in a dose-response assay using compound-induced transcriptomic profiles over concentration.
networkbiology-graphml/TAT’s past year of commit activity - CellPLM Public Forked from OmicsML/CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
networkbiology-graphml/CellPLM’s past year of commit activity - Offtarget_drugsafety Public Forked from myzhengSIMM/Offtarget_drugsafety
In Silico Off-Target Profiling for Enhanced Drug Safety Assessment
networkbiology-graphml/Offtarget_drugsafety’s past year of commit activity
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