The CMO Cell-Free DNA Informatics (CCI) group’s mission is to develop and apply computational methods to organize, analyze and understand genomic data generated from cfDNA assays such as MSK-ACCESS. The group is responsible for all computational infrastructure needed to deploy, run, and deliver results for research cfDNA assays in a production setting for Center for Molecular Oncology (CMO) at Memorial Sloan Kettering Cancer Center (MSKCC).
CMO Cell-Free DNA (cfDNA) Informatics Team
This organization is created to host all the codebase related to cfDNA based assay in CMO at MSKCC
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- New York, NY
- https://cmo-ci.gitbook.io/cci/
- @MskccCMO
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Repositories
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- uncollapsed_bam_generation Public
Workflow for making MSK-ACCESS standard binary alignment mapping file.
msk-access/uncollapsed_bam_generation’s past year of commit activity - bam_collapsing Public
Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS
msk-access/bam_collapsing’s past year of commit activity - postprocessing_variant_calls Public
This repository helps with processing for variant calls made by a given caller
msk-access/postprocessing_variant_calls’s past year of commit activity - cwl-commandlinetools Public Forked from mskcc/cwl-commandlinetools
Central location for CWL CommandLineTools
msk-access/cwl-commandlinetools’s past year of commit activity
