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Python Package for running protein inference algorithms on tab-formatted tandem MS/MS search results.

Python 2 Updated Aug 8, 2024

Python client for PRIDE Archive Rest API.

Python 17 4 Updated Oct 16, 2024

Align proteins to genomes with splicing and frameshift

C 330 18 Updated Oct 7, 2024

A crate to help you go wide. By which I mean use SIMD stuff.

Rust 299 25 Updated Aug 21, 2024

Vector class library, latest version

C++ 1,301 148 Updated Feb 1, 2024

A lightweight python-only library for reading and writing SMILES strings

Python 147 21 Updated Oct 21, 2024

Multi-Omics Peptide Generator

Python 6 1 Updated Oct 25, 2024

Prediction of glycopeptide fragment mass spectra by deep learning

Python 7 2 Updated Feb 20, 2024
Python 3 1 Updated Oct 8, 2024

NewAnce is a java software tool for MSMS searching proteogenomics databases. See Chong et al. Nature Comm. 2020 (https://www.nature.com/articles/s41467-020-14968-9) and README for more information.

Java 5 3 Updated Oct 3, 2024

A .NET Core hosting library written in Rust with included bindings for nethost and hostfxr.

Rust 106 7 Updated Jul 13, 2024
Julia 14 3 Updated Nov 5, 2024

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Rust 4 2 Updated Nov 6, 2024

A list of tools on proteomics using deep learning

88 23 Updated May 5, 2024

A rust library for parsing Pro Forma peptides and matching them against MS spectra

Rust 16 4 Updated Nov 6, 2024
Rust 24 11 Updated Oct 25, 2024

Data Processing Kitchen Sink for proteomics data

Jupyter Notebook 8 2 Updated Aug 7, 2024

Exon is an OLAP query engine specifically for biology and life science applications.

Rust 52 3 Updated Oct 29, 2024

Notebooks to accompany my ASMS poster on Depthcharge

Jupyter Notebook 3 1 Updated Jul 13, 2023

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Python 89 15 Updated Sep 14, 2024

Python framework for Deep Learning in Proteomics

Python 23 9 Updated Oct 30, 2024

Code for the ms2graph project

Python 3 Updated Apr 6, 2022

Python-based framework for computational immunomics

Python 14 7 Updated Jan 11, 2024

A playbook for systematically maximizing the performance of deep learning models.

27,061 2,246 Updated Jun 18, 2024

Python pathlib-style classes for cloud storage services such as Amazon S3, Azure Blob Storage, and Google Cloud Storage.

Python 470 59 Updated Oct 22, 2024

VS Code Language Extension for Cython

Shell 43 3 Updated Mar 22, 2024

Yet another redundant workflow engine

Python 520 45 Updated Sep 3, 2024

Helps you convert raw mass spec data into tensors!

Python 10 3 Updated Oct 1, 2024
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