Starred repositories
Python Package for running protein inference algorithms on tab-formatted tandem MS/MS search results.
A crate to help you go wide. By which I mean use SIMD stuff.
A lightweight python-only library for reading and writing SMILES strings
Prediction of glycopeptide fragment mass spectra by deep learning
NewAnce is a java software tool for MSMS searching proteogenomics databases. See Chong et al. Nature Comm. 2020 (https://www.nature.com/articles/s41467-020-14968-9) and README for more information.
A .NET Core hosting library written in Rust with included bindings for nethost and hostfxr.
A Framework for IMS-MS Raw Data Processing written in Rust and Python.
A list of tools on proteomics using deep learning
A rust library for parsing Pro Forma peptides and matching them against MS spectra
Data Processing Kitchen Sink for proteomics data
Exon is an OLAP query engine specifically for biology and life science applications.
Notebooks to accompany my ASMS poster on Depthcharge
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Python framework for Deep Learning in Proteomics
Python-based framework for computational immunomics
A playbook for systematically maximizing the performance of deep learning models.
Python pathlib-style classes for cloud storage services such as Amazon S3, Azure Blob Storage, and Google Cloud Storage.