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[MNT]: test failures in codespaces #29218

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rcomer opened this issue Dec 2, 2024 · 4 comments
Open

[MNT]: test failures in codespaces #29218

rcomer opened this issue Dec 2, 2024 · 4 comments
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@rcomer
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rcomer commented Dec 2, 2024 •
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Summary

I just tried running the tests against a clean branch in codespaces and got these failures

FAILED lib/matplotlib/tests/test_backend_pgf.py::test_pdf_pages_metadata_check[lualatex] - matplotlib.backends.backend_pgf.LatexError: LaTeX errored (probably missing font or error in preamble) while processing the following input:
FAILED lib/matplotlib/tests/test_backend_pgf.py::test_minus_signs_with_tex[lualatex-pdf] - matplotlib.backends.backend_pgf.LatexError: LaTeX errored (probably missing font or error in preamble) while processing the following input:
FAILED lib/matplotlib/tests/test_texmanager.py::test_openin_any_paranoid - assert "QStandardPat...-codespace'\n" == ''
Failure Details 

_________________________________________________________________________________________ test_pdf_pages_metadata_check[lualatex] _________________________________________________________________________________________
[gw2] linux -- Python 3.12.7 /home/codespace/micromamba/envs/mpl-dev/bin/python3.12

monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7eedae2ff110>, system = 'lualatex'

    @mpl.style.context('default')
    @pytest.mark.backend('pgf')
    @pytest.mark.parametrize('system', [
        pytest.param('lualatex', marks=[needs_pgf_lualatex]),
        pytest.param('pdflatex', marks=[needs_pgf_pdflatex]),
        pytest.param('xelatex', marks=[needs_pgf_xelatex]),
    ])
    def test_pdf_pages_metadata_check(monkeypatch, system):
        # Basically the same as test_pdf_pages, but we keep it separate to leave
        # pikepdf as an optional dependency.
        pikepdf = pytest.importorskip('pikepdf')
        monkeypatch.setenv('SOURCE_DATE_EPOCH', '0')
    
        mpl.rcParams.update({'pgf.texsystem': system})
    
        fig, ax = plt.subplots()
        ax.plot(range(5))
    
        md = {
            'Author': 'me',
            'Title': 'Multipage PDF with pgf',
            'Subject': 'Test page',
            'Keywords': 'test,pdf,multipage',
            'ModDate': datetime.datetime(
                1968, 8, 1, tzinfo=datetime.timezone(datetime.timedelta(0))),
            'Trapped': 'True'
        }
        path = os.path.join(result_dir, f'pdfpages_meta_check_{system}.pdf')
        with PdfPages(path, metadata=md) as pdf:
>           pdf.savefig(fig)

lib/matplotlib/tests/test_backend_pgf.py:261: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
lib/matplotlib/backends/backend_pgf.py:1005: in savefig
    figure.savefig(self._file, format="pgf", backend="pgf", **kwargs)
lib/matplotlib/figure.py:3485: in savefig
    self.canvas.print_figure(fname, **kwargs)
lib/matplotlib/backend_bases.py:2184: in print_figure
    result = print_method(
lib/matplotlib/backend_bases.py:2040: in <lambda>
    print_method = functools.wraps(meth)(lambda *args, **kwargs: meth(
lib/matplotlib/backends/backend_pgf.py:821: in print_pgf
    self._print_pgf_to_fh(file, **kwargs)
lib/matplotlib/backends/backend_pgf.py:806: in _print_pgf_to_fh
    self.figure.draw(renderer)
lib/matplotlib/artist.py:94: in draw_wrapper
    result = draw(artist, renderer, *args, **kwargs)
lib/matplotlib/artist.py:71: in draw_wrapper
    return draw(artist, renderer)
lib/matplotlib/figure.py:3252: in draw
    mimage._draw_list_compositing_images(
lib/matplotlib/image.py:134: in _draw_list_compositing_images
    a.draw(renderer)
lib/matplotlib/artist.py:71: in draw_wrapper
    return draw(artist, renderer)
lib/matplotlib/axes/_base.py:3182: in draw
    mimage._draw_list_compositing_images(
lib/matplotlib/image.py:134: in _draw_list_compositing_images
    a.draw(renderer)
lib/matplotlib/artist.py:71: in draw_wrapper
    return draw(artist, renderer)
lib/matplotlib/axis.py:1411: in draw
    tlb1, tlb2 = self._get_ticklabel_bboxes(ticks_to_draw, renderer)
lib/matplotlib/axis.py:1338: in _get_ticklabel_bboxes
    return ([tick.label1.get_window_extent(renderer)
lib/matplotlib/text.py:969: in get_window_extent
    bbox, info, descent = self._get_layout(self._renderer)
lib/matplotlib/text.py:373: in _get_layout
    _, lp_h, lp_d = _get_text_metrics_with_cache(
lib/matplotlib/text.py:69: in _get_text_metrics_with_cache
    return _get_text_metrics_with_cache_impl(
lib/matplotlib/text.py:77: in _get_text_metrics_with_cache_impl
    return renderer_ref().get_text_width_height_descent(text, fontprop, ismath)
lib/matplotlib/backends/backend_pgf.py:727: in get_text_width_height_descent
    w, h, d = (LatexManager._get_cached_or_new()
lib/matplotlib/backends/backend_pgf.py:226: in _get_cached_or_new
    return cls._get_cached_or_new_impl(cls._build_latex_header())
lib/matplotlib/backends/backend_pgf.py:231: in _get_cached_or_new_impl
    return cls()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <matplotlib.backends.backend_pgf.LatexManager object at 0x7eedade20e30>

    def __init__(self):
        # create a tmp directory for running latex, register it for deletion
        self._tmpdir = TemporaryDirectory()
        self.tmpdir = self._tmpdir.name
        self._finalize_tmpdir = weakref.finalize(self, self._tmpdir.cleanup)
    
        # test the LaTeX setup to ensure a clean startup of the subprocess
        self._setup_latex_process(expect_reply=False)
        stdout, stderr = self.latex.communicate("\n\\makeatletter\\@@end\n")
        if self.latex.returncode != 0:
>           raise LatexError(
                f"LaTeX errored (probably missing font or error in preamble) "
                f"while processing the following input:\n"
                f"{self._build_latex_header()}",
                stdout)
E           matplotlib.backends.backend_pgf.LatexError: LaTeX errored (probably missing font or error in preamble) while processing the following input:
E           \documentclass{article}
E           % !TeX program = lualatex
E           \usepackage{graphicx}
E           \def\mathdefault#1{#1}
E           \everymath=\expandafter{\the\everymath\displaystyle}
E           \IfFileExists{scrextend.sty}{
E             \usepackage[fontsize=10.000000pt]{scrextend}
E           }{
E             \renewcommand{\normalsize}{\fontsize{10.000000}{12.000000}\selectfont}
E             \normalsize
E           }
E           
E           \ifdefined\pdftexversion\else  % non-pdftex case.
E             \usepackage{fontspec}
E             \setmainfont{DejaVuSerif.ttf}[Path=\detokenize{/workspaces/matplotlib/lib/matplotlib/mpl-data/fonts/ttf/}]
E             \setsansfont{DejaVuSans.ttf}[Path=\detokenize{/workspaces/matplotlib/lib/matplotlib/mpl-data/fonts/ttf/}]
E             \setmonofont{DejaVuSansMono.ttf}[Path=\detokenize{/workspaces/matplotlib/lib/matplotlib/mpl-data/fonts/ttf/}]
E           \fi
E           \makeatletter\@ifpackageloaded{underscore}{}{\usepackage[strings]{underscore}}\makeatother
E           \begin{document}
E           \typeout{pgf_backend_query_start}
E           This is LuaTeX, Version 1.10.0 (TeX Live 2019/Debian) 
E            restricted system commands enabled.
E           **LaTeX2e <2020-02-02> patch level 2
E           
E           [\directlua]:1: module 'luaotfload-main' not found:
E               no field package.preload['luaotfload-main']
E               [kpse lua searcher] file not found: 'luaotfload-main'
E               [kpse C searcher] file not found: 'luaotfload-main'
E           Error in luaotfload: reverting to OT1L3 programming layer <2020-02-14>
E           *
E           *(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
E           Document Class: article 2019/12/20 v1.4l Standard LaTeX document class
E           (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo
E           (/usr/share/texmf/tex/latex/lm/ot1lmr.fd)))
E           *(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/luatex.def)))
E           *
E           *
E           *
E           *
E           *
E           *
E           *
E           *(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrextend.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrkbase.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrbase.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty))))
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrsize10pt.clo)
E           (Please type a command or say `\end')
E           *
E           *
E           *(/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def)))
E           (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-luatex.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
E           ! Font \TU/lmr/m/n/10=[lmroman10-regular]:+tlig; at 10pt not loadable: metric d
E           ata not found or bad.
E           <to be read again> 
E           relax 
E           l.112 ...lt\familydefault\seriesdefault\shapedefault
E                                                             
E            347 words of node memory still in use:
E              2 hlist, 1 rule, 1 dir, 48 glue_spec, 3 if_stack, 1 write nodes
E              avail lists: 2:9,3:1,4:1,5:2,7:2,9:3
E           !  ==> Fatal error occurred, no output PDF file produced!
E           Transcript written on texput.log.

lib/matplotlib/backends/backend_pgf.py:267: LatexError
_________________________________________________________________________________________ test_minus_signs_with_tex[lualatex-pdf] _________________________________________________________________________________________
[gw2] linux -- Python 3.12.7 /home/codespace/micromamba/envs/mpl-dev/bin/python3.12

ext = 'pdf', request = <FixtureRequest for <Function test_minus_signs_with_tex[lualatex-pdf]>>, args = (), kwargs = {'texsystem': 'lualatex'}, file_name = 'test_minus_signs_with_tex[lualatex-pdf]'
fig_test = <Figure size 640x480 with 0 Axes>, fig_ref = <Figure size 640x480 with 0 Axes>, figs = []
test_image_path = PosixPath('/workspaces/matplotlib/result_images/test_backend_pgf/test_minus_signs_with_tex[lualatex-pdf].pdf')
ref_image_path = PosixPath('/workspaces/matplotlib/result_images/test_backend_pgf/test_minus_signs_with_tex[lualatex-pdf]-expected.pdf')

    @pytest.mark.parametrize("ext", extensions)
    def wrapper(*args, ext, request, **kwargs):
        if 'ext' in old_sig.parameters:
            kwargs['ext'] = ext
        if 'request' in old_sig.parameters:
            kwargs['request'] = request
    
        file_name = "".join(c for c in request.node.name
                            if c in ALLOWED_CHARS)
        try:
            fig_test = plt.figure("test")
            fig_ref = plt.figure("reference")
            with _collect_new_figures() as figs:
                func(*args, fig_test=fig_test, fig_ref=fig_ref, **kwargs)
            if figs:
                raise RuntimeError('Number of open figures changed during '
                                   'test. Make sure you are plotting to '
                                   'fig_test or fig_ref, or if this is '
                                   'deliberate explicitly close the '
                                   'new figure(s) inside the test.')
            test_image_path = result_dir / (file_name + "." + ext)
            ref_image_path = result_dir / (file_name + "-expected." + ext)
>           fig_test.savefig(test_image_path)

lib/matplotlib/testing/decorators.py:420: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
lib/matplotlib/figure.py:3485: in savefig
    self.canvas.print_figure(fname, **kwargs)
lib/matplotlib/backend_bases.py:2184: in print_figure
    result = print_method(
lib/matplotlib/backend_bases.py:2040: in <lambda>
    print_method = functools.wraps(meth)(lambda *args, **kwargs: meth(
lib/matplotlib/backends/backend_pgf.py:834: in print_pdf
    self.print_pgf(tmppath / "figure.pgf", **kwargs)
lib/matplotlib/backends/backend_pgf.py:821: in print_pgf
    self._print_pgf_to_fh(file, **kwargs)
lib/matplotlib/backends/backend_pgf.py:806: in _print_pgf_to_fh
    self.figure.draw(renderer)
lib/matplotlib/artist.py:94: in draw_wrapper
    result = draw(artist, renderer, *args, **kwargs)
lib/matplotlib/artist.py:71: in draw_wrapper
    return draw(artist, renderer)
lib/matplotlib/figure.py:3252: in draw
    mimage._draw_list_compositing_images(
lib/matplotlib/image.py:134: in _draw_list_compositing_images
    a.draw(renderer)
lib/matplotlib/artist.py:71: in draw_wrapper
    return draw(artist, renderer)
lib/matplotlib/text.py:752: in draw
    bbox, info, descent = self._get_layout(renderer)
lib/matplotlib/text.py:373: in _get_layout
    _, lp_h, lp_d = _get_text_metrics_with_cache(
lib/matplotlib/text.py:69: in _get_text_metrics_with_cache
    return _get_text_metrics_with_cache_impl(
lib/matplotlib/text.py:77: in _get_text_metrics_with_cache_impl
    return renderer_ref().get_text_width_height_descent(text, fontprop, ismath)
lib/matplotlib/backends/backend_pgf.py:727: in get_text_width_height_descent
    w, h, d = (LatexManager._get_cached_or_new()
lib/matplotlib/backends/backend_pgf.py:226: in _get_cached_or_new
    return cls._get_cached_or_new_impl(cls._build_latex_header())
lib/matplotlib/backends/backend_pgf.py:231: in _get_cached_or_new_impl
    return cls()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _

self = <matplotlib.backends.backend_pgf.LatexManager object at 0x7eedae6f3b30>

    def __init__(self):
        # create a tmp directory for running latex, register it for deletion
        self._tmpdir = TemporaryDirectory()
        self.tmpdir = self._tmpdir.name
        self._finalize_tmpdir = weakref.finalize(self, self._tmpdir.cleanup)
    
        # test the LaTeX setup to ensure a clean startup of the subprocess
        self._setup_latex_process(expect_reply=False)
        stdout, stderr = self.latex.communicate("\n\\makeatletter\\@@end\n")
        if self.latex.returncode != 0:
>           raise LatexError(
                f"LaTeX errored (probably missing font or error in preamble) "
                f"while processing the following input:\n"
                f"{self._build_latex_header()}",
                stdout)
E           matplotlib.backends.backend_pgf.LatexError: LaTeX errored (probably missing font or error in preamble) while processing the following input:
E           \documentclass{article}
E           % !TeX program = lualatex
E           \usepackage{graphicx}
E           \def\mathdefault#1{#1}
E           \everymath=\expandafter{\the\everymath\displaystyle}
E           \IfFileExists{scrextend.sty}{
E             \usepackage[fontsize=12.000000pt]{scrextend}
E           }{
E             \renewcommand{\normalsize}{\fontsize{12.000000}{14.400000}\selectfont}
E             \normalsize
E           }
E           
E           \ifdefined\pdftexversion\else  % non-pdftex case.
E             \usepackage{fontspec}
E             \setmainfont{DejaVuSerif.ttf}[Path=\detokenize{/workspaces/matplotlib/lib/matplotlib/mpl-data/fonts/ttf/}]
E             \setsansfont{DejaVuSans.ttf}[Path=\detokenize{/workspaces/matplotlib/lib/matplotlib/mpl-data/fonts/ttf/}]
E             \setmonofont{DejaVuSansMono.ttf}[Path=\detokenize{/workspaces/matplotlib/lib/matplotlib/mpl-data/fonts/ttf/}]
E           \fi
E           \makeatletter\@ifpackageloaded{underscore}{}{\usepackage[strings]{underscore}}\makeatother
E           \begin{document}
E           \typeout{pgf_backend_query_start}
E           This is LuaTeX, Version 1.10.0 (TeX Live 2019/Debian) 
E            restricted system commands enabled.
E           **LaTeX2e <2020-02-02> patch level 2
E           
E           [\directlua]:1: module 'luaotfload-main' not found:
E               no field package.preload['luaotfload-main']
E               [kpse lua searcher] file not found: 'luaotfload-main'
E               [kpse C searcher] file not found: 'luaotfload-main'
E           Error in luaotfload: reverting to OT1L3 programming layer <2020-02-14>
E           *
E           *(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
E           Document Class: article 2019/12/20 v1.4l Standard LaTeX document class
E           (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo
E           (/usr/share/texmf/tex/latex/lm/ot1lmr.fd)))
E           *(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
E           (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/luatex.def)))
E           *
E           *
E           *
E           *
E           *
E           *
E           *
E           *(/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrextend.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrkbase.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrbase.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrlfile.sty))))
E           (/usr/share/texlive/texmf-dist/tex/latex/koma-script/scrsize12pt.clo)
E           (Please type a command or say `\end')
E           *
E           *
E           *(/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def)))
E           (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-luatex.sty
E           (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
E           ! Font \TU/lmr/m/n/12=[lmroman12-regular]:+tlig; at 12pt not loadable: metric d
E           ata not found or bad.
E           <to be read again> 
E           relax 
E           l.112 ...lt\familydefault\seriesdefault\shapedefault
E                                                             
E            347 words of node memory still in use:
E              2 hlist, 1 rule, 1 dir, 48 glue_spec, 3 if_stack, 1 write nodes
E              avail lists: 2:9,3:2,4:1,5:2,7:2,9:3
E           !  ==> Fatal error occurred, no output PDF file produced!
E           Transcript written on texput.log.

lib/matplotlib/backends/backend_pgf.py:267: LatexError
________________________________________________________________________________________________ test_openin_any_paranoid _________________________________________________________________________________________________
[gw0] linux -- Python 3.12.7 /home/codespace/micromamba/envs/mpl-dev/bin/python3.12

    @needs_usetex
    def test_openin_any_paranoid():
        completed = subprocess_run_for_testing(
            [sys.executable, "-c",
             'import matplotlib.pyplot as plt;'
             'plt.rcParams.update({"text.usetex": True});'
             'plt.title("paranoid");'
             'plt.show(block=False);'],
            env={**os.environ, 'openin_any': 'p'}, check=True, capture_output=True)
>       assert completed.stderr == ""
E       assert "QStandardPat...-codespace'\n" == ''
E         
E         + QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-codespace'

lib/matplotlib/tests/test_texmanager.py:75: AssertionError

Proposed fix

The first two failures seem to indicate something is missing. Is this something that can be added to the codespace setup?

cc @melissawm as I think you are the codespaces expert.
@rcomer rcomer mentioned this issue Dec 2, 2024
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@story645
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story645 commented Dec 2, 2024 •
edited
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I get those first two errors on Windows (rerunning the tests a few times) so I think that's a Windows issue and not a codespaces issue.

@ksunden
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ksunden commented Dec 4, 2024

Well codespaces is Linux, so that is not it specifically... but there may be some either font or other dependency that we should be installing in codespaces to avoid these.... perhaps a comparison to the deps installed in tests is in order?

The two things indicated in the error message are luaotfloader (which should be provided by texlive-luatex, I believe, and the lmroman12, a font. Not sure which is the problem, but things to push on.

@QuLogic
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QuLogic commented Dec 5, 2024

lmroman is Latin Modern, but we list lmodern in .devcontainers/devcontainer.json, so not sure why the metrics are missing.

@QuLogic
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QuLogic commented Dec 5, 2024 •
edited
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luaotfloader (which should be provided by texlive-luatex, I believe,

Apparently, we are missing texlive-luatex; texlive-latex-recommended only has it in Suggests.

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@QuLogic @story645 @ksunden @rcomer