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Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
Point in time artifact of the Simple Cloud Accelerator project with Third Rock Ventures
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
A nextflow variant benchmarking pipeline - premature
Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts
The ultimate Python library in building OAuth, OpenID Connect clients and servers. JWS,JWE,JWK,JWA,JWT included.
nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks
Linter rules for Nextflow DSL scripts
A special GitHub repository for setting the Cytomining organization profile and default community health files.
🏆 📚 A list of awesome MkDocs projects and plugins.
Guide to using YubiKey for GnuPG and SSH
The pytest plugin for your copier templates 📒
A DSL for data-driven computational pipelines
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
A modern cookiecutter template for Python projects that use Poetry for dependency management
The OpenTF Manifesto expresses concern over HashiCorp's switch of the Terraform license from open-source to the Business Source License (BSL) and calls for the tool's return to a truly open-source …
An example starting point monorepo for data sicence teams
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
Algorithms used to predict codons that initiate translation in a given nucleotide sequence.
Params validation plugin for Nextflow pipelines
Call and score variants from WGS/WES of rare disease patients.
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
Chat with your database (SQL, CSV, pandas, polars, mongodb, noSQL, etc). PandasAI makes data analysis conversational using LLMs (GPT 3.5 / 4, Anthropic, VertexAI) and RAG.
RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
This repo will host code for harmonizing the UKBB Data Basket Data on AWS Infrastructure.