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  1. scverse/scanpy scverse/scanpy Public

    Single-cell analysis in Python. Scales to >1M cells.

    Python 1.9k 598

  2. scverse/anndata scverse/anndata Public

    Annotated data.

    Python 577 152

  3. scverse/spatialdata scverse/spatialdata Public

    An open and interoperable data framework for spatial omics data

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  4. scverse/genomic-features scverse/genomic-features Public

    Genomic Features in Python from BioConductor's AnnotationHub

    Python 19 5

  5. constclust constclust Public

    Consistent Clusters for scRNA-seq

    Python 10