apktool

d2j-jar2dex -h
d2j-jar-remap -h
d2j-dex2jar -h
dex2jar
d2j-jasmin2jar -h
d2j-jar-access -h
d2j-asm-verify -h
.
.
.

edb

javasnoop

jd-gui

smali --help

callgrind_annotate -h
callgrind_control -h
cg_annotate -h
cg_diff -h
ms_print -h
valgrind -h
cg_merge
.
.
.
.

yara --help