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Merge pull request #5 from kant/patch-1
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Syntax issues on strings 19, 41 & paragraph 03
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giannimonaco authored Jul 16, 2019
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6 changes: 3 additions & 3 deletions README.md
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# ABsolute Immune Signal (ABIS) deconvolution

This Shiny app performs absolute deconvolution on RNA-Seq and microarray data. It also contain a Gene Viewer page where the expression of a gene can be visualized accorss 29 immune cell types.
This Shiny app performs absolute deconvolution on RNA-Seq and microarray data. It also contain a Gene Viewer page where the expression of a gene can be visualized across 29 immune cell types.

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## INSTALLATION
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### Run it locally without installation

You need to download the app from GitHub through R and it will run locally. However, as soon as you will close R, the app will not be available anymore and you need it to download it again.
All the packages and dependecies have to be installed first.
All the packages and dependencies have to be installed first.

install.packages(c("shiny", "MASS", "preprocessCore"), dependencies = TRUE)

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### Microarray deconvolution
For microarray deconvolution, the expression values should derive from the selection of the maximum expression value from the probes encoding for a single gene.
Micorarray deconvolution has been implemented using data from Illumina HT-12 v4.
Microarray deconvolution has been implemented using data from Illumina HT-12 v4.

Please, be aware that platform and pre-processing specific effects can occur.

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