Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Jun 9, 2019

• Small README edit

  davhel

  committed
  0942fc9

• Added Usage instructions to README

  davhel

  committed
  b945a03

Commits on May 12, 2019

• Update README.md

  davhel

  authored
  a9696ef

• Update README.md

  davhel

  authored
  33215d7

• Create LICENSE.txt

  davhel

  authored
  cf4aae6

• Update README.md

  davhel

  authored
  928bc65

Commits on Sep 3, 2018

• [Transition Overlay] Added visual marker for tracked (green) and non tracked (orage) edges as colored dot in the center of the edges. Added trackedEdgeNo, Division, Elimination to stats file

  davhel

  committed
  1d260f0

Commits on Aug 31, 2018

• [Transition overlay] added simple stats export file reporting number of edges and transitions for each frame from the chosen starting frame onwards

  davhel

  committed
  2e021b5

Commits on Jul 2, 2018

• T1: deactivated border check by trying to force inference despite of detection errors (try/catch). Not recommended for production before extensive testing!

  davhel

  committed
  39c2aa1

Commits on Jun 13, 2018

• T1: changed T1 detection condition to include the chosen threshold values, in order to fit the description

  davhel

  committed
  0212464

Commits on Dec 1, 2017

• BorderOverlay: Added functionality to display displacement of cells as red arrow connecting the current centroid of each cell with the centroid of the last known occurrence (not necessarily in the …

  Show description for bb3506d
  davhel

  committed
  bb3506d

Commits on Sep 27, 2017

• EdgeColorTag: [export unstable!] reversed ROI length computation from commit df4e4b7 to the actual length of the Edge and not the measurement ROI. Because the mesurement ROI is an area Geometry, th…

  Show description for d8212d5
  davhel

  committed
  d8212d5

Commits on Jul 24, 2017

• CellExport: added perimeter to BigXlsExporter

  davhel

  committed
  90d7190

Commits on Apr 21, 2017

• Merge branch 'feature/T1_long_array' into feature/manual_tracking

  davhel

  committed
  c8b7e93

• Tracking: Added exception to division calling when the mother cell was on the boundary in the first frame and the two daughter cells as well.

  davhel

  committed
  8ecfcdf

• T1: updated EdgeTracking Framework. Divisions and eliminations are to be included by only up and untill the event happens. The tracks are shortened accordingly

  davhel

  committed
  9773d7d

• T1: include transitions where the winner cell is a division

  davhel

  committed
  fa2a452

• Fixed bug in FlowOverlay visualization, check needed for short tracks as future time points might not be available

  davhel

  committed
  77950fa

Commits on Apr 19, 2017

• T1: changed from boolean array to Long array to store the tracking ids of the edges. In this way an edge can change it's tracking id over time and we keep reference of it. Absence of the edge is no…

  Show description for cadb2ed
  davhel

  committed
  cadb2ed

• Restructured Imports; Used wildcard for CellOverlay as allmost all Overlays get imported anyway

  davhel

  committed
  0bbf36d

• CellSurface: Fixed bug affecting the ROI3DPolygonalMesh generation. Object seemingly needed Abstract class input.

  davhel

  committed
  0e84c15

• FlowOverlay: Added circle marker to highlight current position

  davhel

  committed
  7918b48

• Converted the EdgeTracking class static methods into a object methods. This follows what has been previously done on the new_edge_tracking branch at commit d429eb23a16436fe7af7894be9001ef3956e5d9b

  davhel

  committed
  89db7ae

• EdgeTracking: fixed missing startingFrame parameter for independent method

  davhel

  committed
  97db337

Commits on Apr 18, 2017

• CellExport: Added export option to write summary excel sheet that contains the relevant summary statistics for each frame

  davhel

  committed
  df3efd7

• PresetExport: Added convenience Preset export for easy loading with TestLoader plugin

  davhel

  committed
  b9a148b

• FlowOverlay: Changed smooth color to red for better visibility on skeleton

  davhel

  committed
  2bf8278

• FlowOverlay: Rewrote export method to adapt according to the style selected by the user; Removed unneccessary method for centroid extraction from node as already contained in flow field (now called…

  Show description for e67e7e3
  davhel

  committed
  e67e7e3

• FlowOverlay: Added control variable to select which flow style to display

  davhel

  committed
  664e5cd

• FlowOverlay: Restored overlay to visualize the flow of the tracked centroids

  davhel

  committed
  5f7d437

Commits on Apr 17, 2017

• Added safety check in case the edge was eliminated because on boundary or the array was resized

  davhel

  committed
  9c34af0

Commits on Apr 8, 2017

• T1 transitions: Fixed inclusion of eliminated cell. Array resizing was not adjusted with starting point correction

  davhel

  committed
  8801f36

• CellFinder: added ability to search for cell id when a spatiotemporal graph with tracking is in the icy swimming pool. Default mode if compatible stGraph is found

  davhel

  committed
  e6d96ed

• T1 transitions: added starting point selected by the user; presence/absence array is automatically shorted. Also the array is resized if the vertexes are on the boundary of the segmentation

  davhel

  committed
  d94330e

Commits on Apr 6, 2017

• T1 transition: added legacy visualization mode flag to CellOverlay GUI and changed new visualization to not intersect the label

  davhel

  committed
  43da79a

Pagination

PreviousNext