Skip to content

Question: How to recover "colors" from the graph? #57

Open
@phiweger

Description

Hi,

I construct a colored dBG w/ Bifrost and remove the overlaps using gimbricate. From the documentation I read that seqwish can now be used to extract the paths of the constituting genomes through the graph (as both paths through the graph and the "colors" of the individual nodes). Could you point me to how I can use seqwish to do this?

Thanks a lot and kind regards!

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions