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Does seqwish supports output with nodes as single characters? #120

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YX-Xiang opened this issue Jan 5, 2024 · 2 comments
Open

Does seqwish supports output with nodes as single characters? #120

YX-Xiang opened this issue Jan 5, 2024 · 2 comments

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@YX-Xiang
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YX-Xiang commented Jan 5, 2024

Hi there,

I am using seqwish to build pangenome graph. I would like to inquire if seqwish supports output with nodes as single characters. Could you please confirm if this functionality is available?

Thank you!
@YX-Xiang YX-Xiang changed the title If seqwish supports output with nodes as single characters? Does seqwish supports output with nodes as single characters? Jan 5, 2024
@ekg
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ekg commented Jan 5, 2024

Yes, but you will want to use odgi chop -c 1 to make the graph have this format.

@YX-Xiang
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YX-Xiang commented Jan 6, 2024

Thank you for the great response! Your answer was really helpful.

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@ekg @YX-Xiang