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efernandezpascual · Jun 6, 2020 · e95200e · e95200e
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diff --git a/.Rhistory b/.Rhistory
diff --git a/app.R b/app.R
@@ -2,7 +2,7 @@ library(shiny)
 
 library(tidyverse); library(maps); library(here)
 source(here("src", "visualizeDB.R"))
-load(here("data", "appdata.RData"))
+load(here("results", "appdata.RData"))
 spp <- WoSDB %>% select(TPLName) %>% arrange(TPLName) %>% pull(TPLName) %>% unique %>% as.character
 
 # Define UI for application that draws a histogram

diff --git a/data/Baskins/Resultado de la búsqueda.docx b/data/Baskins/Resultado de la búsqueda.docx
diff --git a/data/Baskins/Species with BASKIN data.csv b/data/Baskins/Species with BASKIN data.csv
diff --git a/data/GEB rev1/Forest_WoS - rev1 - revisión manual de substratos.csv b/data/GEB rev1/Forest_WoS - rev1 - revisión manual de substratos.csv
diff --git a/data/WoS/Apuntes fechas búsqueda original.jpg b/data/WoS/Apuntes fechas búsqueda original.jpg
diff --git a/data/WoS/Forest_Review (final WoS).xlsx b/data/WoS/Forest_Review (final WoS).xlsx
diff --git a/data/WoS/Forest_WoS (purgada).xlsx b/data/WoS/Forest_WoS (purgada).xlsx
diff --git a/data/WoS/Forest_WoS.csv b/data/WoS/Forest_WoS.csv
diff --git a/data/WoS/Populations.xlsx b/data/WoS/Populations.xlsx
diff --git a/data/WoS/References.xlsx b/data/WoS/References.xlsx
diff --git a/data/WoS/Stratification.csv b/data/WoS/Stratification.csv
@@ -0,0 +1,55 @@
+Stratification,Stratification_type
+-5,Cold
+0,Cold
+0.9,Cold
+1,Cold
+1.5,Cold
+2,Cold
+2.5,Cold
+3,Cold
+3.5,Cold
+3.8,Cold
+4,Cold
+4.4,Cold
+4.5,Cold
+5,Cold
+6,Cold
+8,Cold
+9,Cold
+10,Cold
+15,Warm
+17.5,Warm
+20,Warm
+23,Warm
+25,Warm
+"""5/1""",Cold
+"1, DAR",Cold
+15+3,W+C
+15+5,W+C
+18+4,W+C
+20/10+2,W+C
+20+2,W+C
+20+3,W+C
+20C,Warm
+20C+3C,W+C
+20C+4C,W+C
+23C+4C+23C+4C,W+C
+25/10+20/7+15/4+5,W+C
+25/15+5/1,W+C
+25/15C,Warm
+25+5,W+C
+25C/15C+20/10+15/6+5,W+C
+25C/15C+5C,W+C
+26C+4C,W+C
+3+25+3+25+3,W+C
+30/15C,Warm
+30/20+4,W+C
+30/20C+4C+30/20C+4C,W+C
+4C+15/5C+4C,C+W
+5+15/4+20/7+25/10,C+W
+5C+15/5+20/10+25/15+20/10+15/5+5+15/6,C+W
+DAR,Warm
+Field buried,Cold
+None,None
+Outdoors,Cold
+Soil,Cold
diff --git a/doc/ms/GEBv1/Cover letter.docx b/doc/ms/GEBv1/Cover letter.docx
diff --git a/doc/ms/GEBv1/Sylvan Seeds.docx b/doc/ms/GEBv1/Sylvan Seeds.docx
diff --git a/doc/ms/GEBv1/Title page.docx b/doc/ms/GEBv1/Title page.docx
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Germination.png b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Germination.png
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Map.png b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Map.png
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Reference list WoS.Rmd b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Reference list WoS.Rmd
@@ -0,0 +1,18 @@
+---
+title: "References WoS"
+author: "Eduardo Fernández Pascual"
+date: "17/3/2020"
+output: html_document
+---
+
+```{r setup, include=FALSE}
+knitr::opts_chunk$set(echo = TRUE)
+```
+
+```{r message = FALSE, echo = FALSE, warning = FALSE}
+library(tidyverse); library(kableExtra)
+load("C:/EFP/Trabayu/GitHub/sylvanseeds/data/WoSDB.RData")
+References %>% select(Reference) %>% arrange(Reference) %>% kable(caption = "Appendix 1 – Data sources. List of references used to build the germination database.", booktabs = TRUE) %>% kable_styling(latex_options = c("striped", "hold_position"))
+```
+
+Refs
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Reference-list-WoS.docx b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Reference-list-WoS.docx
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Reference-list-WoS.html b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Reference-list-WoS.html
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Stratification.csv b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Stratification.csv
@@ -0,0 +1,55 @@
+Stratification_temperature,Stratification_type
+-5,Cold
+0,Cold
+0.9,Cold
+1,Cold
+1.5,Cold
+2,Cold
+2.5,Cold
+3,Cold
+3.5,Cold
+3.8,Cold
+4,Cold
+4.4,Cold
+4.5,Cold
+5,Cold
+6,Cold
+8,Cold
+9,Cold
+10,Cold
+15,Warm
+17.5,Warm
+20,Warm
+23,Warm
+25,Warm
+"""5/1""",Cold
+"1, DAR",Cold
+15+3,W+C
+15+5,W+C
+18+4,W+C
+20/10+2,W+C
+20+2,W+C
+20+3,W+C
+20C,Warm
+20C+3C,W+C
+20C+4C,W+C
+23C+4C+23C+4C,W+C
+25/10+20/7+15/4+5,W+C
+25/15+5/1,W+C
+25/15C,Warm
+25+5,W+C
+25C/15C+20/10+15/6+5,W+C
+25C/15C+5C,W+C
+26C+4C,W+C
+3+25+3+25+3,W+C
+30/15C,Warm
+30/20+4,W+C
+30/20C+4C+30/20C+4C,W+C
+4C+15/5C+4C,C+W
+5+15/4+20/7+25/10,C+W
+5C+15/5+20/10+25/15+20/10+15/5+5+15/6,C+W
+DAR,Warm
+Field buried,Cold
+None,None
+Outdoors,Cold
+Soil,Cold
diff --git a/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Supplementary material 1 - Database.csv b/doc/ms/GEBv1/WoS DB publication/WoS DB cleaning/Supplementary material 1 - Database.csv
diff --git a/doc/ms/GEBv1/draft_Proof_hi.pdf b/doc/ms/GEBv1/draft_Proof_hi.pdf
diff --git a/doc/rev1/GEB-2020-0155.R1_Proof_hi.pdf b/doc/rev1/GEB-2020-0155.R1_Proof_hi.pdf
diff --git a/doc/rev1/Supplementary/Supplementary material 1 - Boolean search string.txt b/doc/rev1/Supplementary/Supplementary material 1 - Boolean search string.txt
diff --git a/doc/rev1/Supplementary/Supplementary material 2 - PRISMA 2009 flow diagram.doc b/doc/rev1/Supplementary/Supplementary material 2 - PRISMA 2009 flow diagram.doc