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Commits on Oct 25, 2024

• Adding unknown sample types

  mwyczalkowski

  committed
  b9a4ccf

Commits on Mar 6, 2023

• Update to catalog2 creation following preservation method query

  mwyczalkowski

  committed
  935e2d5

Commits on Feb 14, 2023

• Convenience update for GDAN projects

  mwyczalkowski

  committed
  a8392f9

• Sanity check to make sure jq exists

  Show description for ab5f149
  mwyczalkowski

  committed
  ab5f149

Commits on Jan 3, 2023

• Bugfix to methylation array processing with new aliquot.dat format

  mwyczalkowski

  committed
  d2c4ed1

Commits on Dec 27, 2022

• Bugfix in case preservation_method is null

  mwyczalkowski

  committed
  9a9f348

Commits on Dec 14, 2022

• Adding preservation_method to catalog3 metadata

  mwyczalkowski

  committed
  d541565

Commits on Nov 4, 2022

• Prevent errors from stopping processing

  mwyczalkowski

  committed
  ce029ad

Commits on Nov 1, 2022

• Changes associated with successful discovery of HCMI data

  Show description for 33dc3ab
  mwyczalkowski

  committed
  33dc3ab

Commits on Oct 31, 2022

• Adding note about branch name change

  mwyczalkowski

  committed
  c1e00d4

Commits on Sep 8, 2022

• Bugfixes and updates

  mwyczalkowski

  committed
  ba282ae

Commits on Sep 7, 2022

• Bugfixes to make sure catalog2, catalog3, and demographics match

  mwyczalkowski

  committed
  5f7aea9

Commits on Aug 31, 2022

• Updates to better deal with missing aliquos and read groups

  mwyczalkowski

  committed
  83cdc6f

Commits on Aug 26, 2022

• Significant changes including adding "state" and functional v2 / v3 catalog creation

  mwyczalkowski

  committed
  8aca724

Commits on Aug 11, 2022

• Minor update with notes for catalog v2 integration

  mwyczalkowski

  committed
  bdb85c9

Commits on Jul 5, 2022

• Partial implementation of catalog2 creation

  mwyczalkowski

  committed
  abdcfac

Commits on Jul 1, 2022

• Create aliquots for both CPTAC and TCGA data models

  Show description for e55a954
  mwyczalkowski

  committed
  e55a954

• Merge branch 'TCGA' of https://github.com/ding-lab/CPTAC3.case.discover into TCGA

  mwyczalkowski

  committed
  86f9251

• Updates for CPTAC3 development

  mwyczalkowski

  committed
  15fc40c

Commits on Jun 27, 2022

• Minor documentation update

  mwyczalkowski

  committed
  ec93335

Commits on Jun 17, 2022

• Updates to run both CPTAC and TCGA models

  mwyczalkowski

  committed
  9a6cc0a

Commits on Jun 16, 2022

• Minor improvements

  mwyczalkowski

  committed
  dbb3cd4

• Updates to Catalog3 processing based on ALCHEMIST processing

  Show description for 845350a
  mwyczalkowski

  committed
  845350a

Commits on Jun 15, 2022

• Generating catalog metadata as dict to json rather than composing string directly

  mwyczalkowski

  committed
  8d1c9ea

• Updates to filename parsing for FASTQ files

  Show description for c9d0000
  mwyczalkowski

  committed
  c9d0000

Commits on Jun 14, 2022

• Partial bugfix to deal with instances where metadata field is NaN

  Show description for cd88f7e
  mwyczalkowski

  committed
  cd88f7e

• Bugfix to metadata json format

  mwyczalkowski

  committed
  cb0cab9

Commits on Jun 7, 2022

• Documentation updates

  mwyczalkowski

  committed
  2c186e0

Commits on Jun 6, 2022

• Making README.project.md into template

  mwyczalkowski

  committed
  4853f6e

Commits on Apr 4, 2022

• Minor update

  mwyczalkowski

  committed
  db193e6

Commits on Mar 24, 2022

• Bugfix for output directory

  mwyczalkowski

  committed
  fd1f4a8

• Adding support for results for both TCGA and CPTAC data models

  mwyczalkowski

  committed
  8a7b85b

Commits on Mar 23, 2022

• Documentation updates

  Show description for 41a1bc2
  mwyczalkowski

  committed
  41a1bc2

• Documentation updates and minor parameter changes

  mwyczalkowski

  committed
  70c18ea

Commits on Mar 16, 2022

• Adding 'Additional - New Primary' and 'Metastatic' sample types

  mwyczalkowski

  committed
  843f175

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