Public RFDiffusionAA repo

The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibod…

Calculate the RMSD between two antibody structure (including nanobody and antibody).

Improved antibody structure-based design using inverse folding

A collection of tools for analysis of full-length sequenced scFvs from in vitro display experiments.

AlphaFold Meets Flow Matching for Generating Protein Ensembles

Tool for rapid clustering of antibody models by the structure of their CDRs.

Generation of protein sequences and evolutionary alignments via discrete diffusion models

Guiding diffusion models for antibody sequence and structure co-design with developability properties.

Chai-1, SOTA model for biomolecular structure prediction

FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer

Open source implementation of AlphaFold3

🇫🇷 Oh my tmux! My self-contained, pretty & versatile tmux configuration made with ❤️

List of papers about Proteins Design using Deep Learning

Protein structure diffusion model for unconditional protein generation and motif scaffolding

Implementation of Alphafold 3 in Pytorch

Epitope Prediction Pipeline and analysis tools built around AlphaFold 2

Microscope control and image acquisition integrated with ImageJ

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

Complex-based Ligand-Binding Proteins Redesign by Equivariant Diffusion-based Generative Models

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, r…

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

starfish: unified pipelines for image-based transcriptomics

An already-configured Obsidian vault for scientific research

Experimental support for Sensirion Liquid Flow sensors