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R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

R 285 49 Updated Sep 29, 2024

NicheNet: predict active ligand-target links between interacting cells

R 483 117 Updated Sep 5, 2024

text2vec, text to vector. 文本向量表征工具,把文本转化为向量矩阵,实现了Word2Vec、RankBM25、Sentence-BERT、CoSENT等文本表征、文本相似度计算模型,开箱即用。

Python 4,481 396 Updated Oct 27, 2024

A package to help convert different single-cell data formats to each other

R 381 55 Updated Feb 28, 2024

An interactive explorer for single-cell transcriptomics data

JavaScript 631 118 Updated Oct 29, 2024

分享一些已读和在读的书籍

62 21 Updated Jun 8, 2023

Technical guide to making money and investing(最全赚钱投资指南)

233 45 Updated Aug 8, 2024

Historical documents (in Chinese) about the GPCR (Thanks Comrade RC MR HR etc.)

HTML 869 268 Updated Sep 21, 2024

Mirror of https://git.ffmpeg.org/ffmpeg.git

C 45,827 12,146 Updated Nov 5, 2024

Clone of the Bioconductor repository for the SingleR package.

R 176 19 Updated Oct 28, 2024

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

R 637 145 Updated Jan 6, 2024

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

HTML 90 24 Updated Nov 26, 2023

Batch balanced KNN

Python 149 23 Updated Oct 11, 2023

强大易用的开源建站工具。

Java 33,958 9,691 Updated Oct 31, 2024
R 23 3 Updated Jan 23, 2024

Discriminatory power of combinatorial antigen recognition in cancer T cell therapies

R 5 Updated Jun 22, 2022

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

R 190 18 Updated Sep 24, 2024

A short tutorial on how to use RSEM

133 46 Updated Apr 19, 2020

10x Genomics Single Cell Analysis

Rust 365 94 Updated Sep 3, 2024

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

C++ 420 118 Updated Mar 13, 2024

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

C++ 776 164 Updated May 29, 2024

Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.

Java 37 3 Updated Jun 14, 2023

Command-line program to download videos from YouTube.com and other video sites

Python 132,229 10,029 Updated Oct 15, 2024

Segmenting cells (and other objects!) in microscopy images via neural networks.

Python 6 5 Updated Mar 15, 2018

📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

R 103 12 Updated Oct 31, 2024

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

HTML 199 53 Updated Oct 29, 2024

Cell types enrichment analysis

HTML 181 61 Updated May 27, 2024
Jupyter Notebook 126 30 Updated Feb 16, 2021

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Python 62 29 Updated Nov 5, 2024
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