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Commits on Jan 17, 2025

• Merge pull request #245 from broadinstitute/fix_hicstraw

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  mayasheth

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• move hic-straw from pip to conda installation

  mayasheth

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Commits on Jan 12, 2025

• Merge branch 'main' of github.com:broadinstitute/ABC-Enhancer-Gene-Prediction into main

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• Merge pull request #243 from broadinstitute/ms-env-test

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  mayasheth

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Commits on Jan 10, 2025

• Delete workflow/envs/release.yml

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  mayasheth

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• Create abcenv_dev.yml

  mayasheth

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Commits on Dec 25, 2024

• Update abcenv.yml

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  mayasheth

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Commits on Dec 7, 2024

• Merge pull request #242 from broadinstitute/fix_conda_env

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  mayasheth

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Commits on Dec 6, 2024

• enforce upper bound on cryptography

  mayasheth

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Commits on Jul 8, 2024

• Merge pull request #229 from broadinstitute/update_nan

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  mayasheth

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Commits on Jul 1, 2024

• Update utils.smk

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  mayasheth

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Commits on Jun 5, 2024

• Update README.md

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  atancoder

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Commits on Jun 4, 2024

• Merge pull request #225 from broadinstitute/atancoder-patch-1

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  atancoder

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• Update circleci config.yml

  atancoder

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Commits on May 30, 2024

• update release conda env

  atancoder

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Commits on May 29, 2024

• Merge pull request #224 from broadinstitute/update_test_hic

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  atancoder

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• utilize amazon link as the encode link leads to a segfault in CircleCI

  atancoder

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Commits on May 14, 2024

• remove default for hic_psuedocount_distance in predict.py since it's confusing with default in the config

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Commits on May 8, 2024

• Merge pull request #221 from broadinstitute/update_hic

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  atancoder

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• Merge branch 'dev' into update_hic

  atancoder

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Commits on May 6, 2024

• Update getting_started.rst

  atancoder

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• only support 5kb res for hic

  atancoder

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Commits on May 2, 2024

• support adaptable search space for hic

  atancoder

  committed
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• clean up hic processing code

  atancoder

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Commits on Apr 30, 2024

• Merge pull request #220 from broadinstitute/update_bedpe

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  atancoder

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• update bedpe file creation

  atancoder

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Commits on Apr 24, 2024

• Merge pull request #219 from broadinstitute/update_bedpe_generation

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  atancoder

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• update bedpe file format

  atancoder

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Commits on Apr 23, 2024

• update troubleshooting doc

  atancoder

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Commits on Apr 2, 2024

• Merge pull request #213 from broadinstitute/dev

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  atancoder

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• update docs w/ troubleshooting. update release.yml

  atancoder

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Commits on Mar 23, 2024

• Merge pull request #210 from broadinstitute/dev

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Commits on Mar 22, 2024

• Merge pull request #209 from broadinstitute/dev_to_main

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  atancoder

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• update reference files for hg38 and hg19

  atancoder

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• prepare for main merge

  atancoder

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