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brendaferrari/README.md

Hi there πŸ‘‹

My name is Brenda Ferrari and I am Postdoctoral researcher working on my bio/cheminformatics and full-stack skills. I write codes and blog posts to share concepts I have learned! If you're interested to learn with my codes feel free to explore!

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About me!

  • πŸ‘¨πŸ½β€πŸ’» I am currently working in a bio-nanoscience project
  • 🌱 I am currently learning more about Full stack development and Deep Learning
  • πŸ“ I am also writing a blog
  • πŸ€” My interests includes using Python, Data Science techniques to solve chemistry problems. I also have interest in Storytelling
  • πŸ’Ό I am pursuing a academic career
  • πŸ’¬ Ask me about anything, I love to answer!
  • ⚑ Fun fact: I ❀️ 🐱s

Connect with me:

linkedin Β  Β  mail Β  Β 


Programming and Markup Languages

Python Shell Script Markdown JavaScript

Frameworks and Libraries

NumPy Pandas SciPy scikit-learn Express.js Nuxtjs TailwindCSS PyTorch TensorFlow

Software and tools

Visual Studio Code Jupyter Notebook Git

brendaferrari's GitHub stats

Top Langs


πŸ“• Latest Blog Posts

Modifying parameters on Graphein

Openbabel installation memo!

GROMACS Molecular Dynamics analysis

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  1. TransformerForReactions TransformerForReactions Public

    Implementation of the Transformer architecture for application in generation of reaction outcomes (Not for production, studies only)

    Python 1

  2. PepToCodes PepToCodes Public

    Script developed to transform the amino acid smiles to one letter code for later analysis

    Python 3

  3. automated-lysozyme-water-forcefields-GROMACS automated-lysozyme-water-forcefields-GROMACS Public

    Script developed to run the commands of the "Lysozyme in Water" tutorial in gromacs in different force fields at once

    Shell 3

  4. AutoPaDELPy AutoPaDELPy Public

    AutoPaDELPy provides an automated user interface for PaDELPy software. It was created to provide a more friendly interaction with the software for the final user.

    Python 5 2

  5. interactive-similarity-network-python interactive-similarity-network-python Public

    Script developed to build an interactive molecular similarity network to visualize Tanimoto similarity between molecules in a dataset.

    HTML 3

  6. machineleaning-datavis machineleaning-datavis Public

    This jupyter code was created to share the model of an interactive graph to present the results of a Machine Learning Classification model.

    HTML