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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1k 253

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 838 173

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 222 75

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 178 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 94 repositories
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Oct 2, 2024
  • sclet Public

    A Lightweight Toolkit for Single-Cell Data Analysis

    YuLab-SMU/sclet’s past year of commit activity
    R 2 1 1 0 Updated Oct 2, 2024
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 1,007 253 323 1 Updated Oct 1, 2024
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc’s past year of commit activity
    R 40 11 0 0 Updated Sep 30, 2024
  • obolite Public

    Create sqlite from an obo file

    YuLab-SMU/obolite’s past year of commit activity
    R 0 1 0 0 Updated Sep 28, 2024
  • ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    YuLab-SMU/ChIPseeker’s past year of commit activity
    R 222 75 102 1 Updated Sep 26, 2024
  • wget Public

    download files in R using wget -c

    YuLab-SMU/wget’s past year of commit activity
    R 17 3 0 0 Updated Sep 24, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 5 GPL-3.0 0 0 0 Updated Sep 24, 2024
  • ggtangle Public

    Draw Network with Data

    YuLab-SMU/ggtangle’s past year of commit activity
    R 6 0 0 0 Updated Sep 18, 2024
  • ggflow Public

    Draw flow chart based on ggtree

    YuLab-SMU/ggflow’s past year of commit activity
    R 8 0 0 0 Updated Sep 18, 2024