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1. single_end_chip_seq_pipeline single_end_chip_seq_pipeline Public

   This pipeline is what I created from scratch to analyze single end cut and run data from mus musculus

   Nextflow

2. Updated_SLE_CutRun_pipeline Updated_SLE_CutRun_pipeline Public

   use a directory of pe reads for this pipeline to analyze cut&run data

   Shell 1 1

3. RNA-seq_pipeline_NF RNA-seq_pipeline_NF Public

   The files for running my RNA-seq nextflow pipeline

   HTML 1 1

4. R_shiny_app_rna-seq R_shiny_app_rna-seq Public

   Making an R shiny app that analyzes RNA-seq data and produces visualizations

   R 1

5. Nextflow_analysis Nextflow_analysis Public

   Here I create a nextflow pipeline that takes pair end reads and outputs a coordinate sorted bam and bai file

   Nextflow 1

6. DESeq2_analysis_mus_musculus DESeq2_analysis_mus_musculus Public

   Analysis of gene expression data from mus musculus