A Python package for analyses of Boolean and semi-quantitative Boolean networks.

nib-si.github.io/BoolDoG

To install:

git clone https://github.com/NIB-SI/BoolDog.git
cd BoolDoG
pip install .

To remove:

pip uninstall booldog

• numpy
• xmltodict
• scipy
• python-igraph
• matplotlib
• pygraphviz (optional)
• PyBoolNet
• networkx

See test-notebook.ipynb.

import booldog
g = booldog.RegulatoryNetwork("./examples/Athaliana.graphml", "graphml")
g.continuous_simulation(t_max=30, gamma=1, h=10)