Open
Description
Dear devs,
I'm interested in visualizing a pangenome matrix from odgi pavs in JBrowse1.
Maybe someone has made something like this viewer, panache as an example.
https://www.appliedbioinformatics.com.au/wheat_panache/
I think it might be possible using a bedgraph -> bigwig conversion, and then individual customized tracks with low track height, eg 50px. But could something more elegant be done ?
For example the below matrix would be represented by 3 separate bedgraphs/bigwigs, each containing the binary presence absence data in the last 3 columns.
Input format tsv input example (more at https://odgi.readthedocs.io/en/latest/rst/tutorials/presence_absence_variants.html )
chr1 10000 20000 1 0 0
chr1 20000 30000 0 1 0
Thanks,
Colin
Metadata
Assignees
Labels
No labels