A curated list of awesome Neuropixels resources, in no particular order. Create a pull request or raise a github issue to add any resources to this list.
- Contents
- Community
- Neuropixels papers
- Data acquisition
- Data preprocessing
- Spike-sorting
- Quality control
- Tracking cells across days
- Loading and plotting data
- Trajectory planning and histology
- General frameworks
- Courses and talks
- SpikeGLX
- Open Ephys GUI
- Synchronizing data streams, optional Arduino code for applying external sync pulses here.
- Applying a phase shift to Neuropixels channels (to correct asynchronous sampling across ADCs):
- Common-average-referencing (gets rid of noise):
- Data compression/decompression:
- Manual curation GUI: Phy, docs
Quality metrics, wiki- /
IBL quality metrics
- UnitMatch, paper here
- Neuron_Tracking, paper here
- Ongoing: 2023 October - UCL Neuropixels Course 2023: more information and signup
- 2022 October - UCL Neuropixels Course 2022
- 2021 October - UCL Neuropixels Course 2021
- 2020 July - University of Strathclyde
- 2020 June - Neuropixels Workshop at the Allen Institute for Brain Science
- 2020 April - UCL Neuropixels Course 2020
- 2019 July - FENS Cajal "Interacting With Neural Circuits"
- 2019 June - Neuropixels Workshop at the Allen Institute for Brain Science
- 2019 May - Paris Neuro
- 2019 April - UCL Neuropixels Course 2019
- 2018 October - FENS Cajal "Linking Neural Circuits and Behavior"
- 2018 May - Paris Neuro
- 2018 April - UCL Neuropixels Course 2018
- 2017 July - FENS Cajal "Interacting With Neural Circuits"
- 2017 May - UCL Neuropixels Course 2017