This form simply adds information about gene function and predicted subcellular localization for query genes.
Gene functions are based on TAIR annotation.
Subcellular localizations are predicted by TargetP and WoLF PSORT.
EdgeAnnotation Extracting coexpression data for query gene pairs
Entrez Gene IDs
Entrez Gene IDs pair
For all possible pairs in query genes.
For user-defined gene pair; Each line should contain tab-delimitated gene pair.
This form returns coexpression data with following information.
PPIs described in TAIR and IntAct.
Common pathways defined by KEGG and AraCyc.
CoExSearch Unified coexpressed gene list from multiple query genes
Entrez Gene IDs
For all possible pairs in query genes.
This form returns unified coexpressed gene list from a couple of query genes (usually less than 10) that strongly coexpress with each other.
To construct unified coexpressed gene list:
1. ATTED-II first makes coexpressed genes list for each of query genes.
2. Then the LS of each gene list is averaged.
3. Finally, coexpressed genes are sorted along with the averaged LS.
BLAST BLAST search
Protein sequences
Entrez Gene ID search from protein sequences.
PPIsearch PPI search
Entrez Gene IDs
This form searches PPIs used in ATTED-II, which are downloaded from TAIR and IntAct.