Stars
Unified knowledge-driven network inference from omics data
🍇 Ensmallen is the Rust/Python high-performance graph processing submodule of the GRAPE library.
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
surround.vim: Delete/change/add parentheses/quotes/XML-tags/much more with ease
Org-mode like task logging & time tracking in Vim
🍪 A full-featured, hackable tiling window manager written and configured in Python (X11 + Wayland)
A neovim port of the high contrast noctis theme for VSCode.
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
kallisto quantification of a cellranger-processed 10x experiment (its bamfile)
Python functions to read the kallisto-bustools format
Python code for handling various aspects of RNAseq data
Tools that come handy when working in scanpy all day long
LankyCyril / pyvenn
Forked from tctianchi/pyvennPython module for plotting Venn diagrams of 2..6 sets
An artware browser add-on to protect privacy in web-search. By issuing randomized queries to common search-engines, TrackMeNot obfuscates your search profile(s) and registers your discontent with s…
Docker container for Illumina bcl2fastq
Python and Java bindings for the OpenSky Network REST API
Fast, flexible and easy to use probabilistic modelling in Python.
alexbw / keras-molecules
Forked from maxhodak/keras-moleculesAutoencoder network for learning a continuous representation of molecular structures.
Gibbs samplers for hierarchical nonparametric Bayesian models
A python/numpy/cython implementation of dynamic time warping (DTW) for aligning time series.
Single-cell analysis in Python. Scales to >1M cells.