An open-source library of algorithms to analyse time series in GPU and CPU.

A performant, powerful query framework to search for network motifs

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Motiflets

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

MetaLogo: a heterogeneity-aware sequence logo generator and aligner

A Java library for Matrix Profile

Source code for VLDB 2020 paper "Hypergraph Motifs: Concepts, Algorithms, and Discoveries."

DYnamic MOtif-NoDes (DYMOND) is a dynamic network generative model based on temporal motifs and node behavior.

Source code for KAIS (2023) paper "Temporal Hypergraph Motifs" and ICDM 2021 paper "THyMe+: Temporal Hypergraph Motifs and Fast Algorithms for Exact Counting."

Local Motif Clustering on Time-Evolving Graphs, KDD 2020

Ember Communication Patterns

This application searches inside a text sequence for words that resemble those inside a list of similar words.

Python bindings for the TFM-Pvalue program.

DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.

A proof-of-concept library for motif analysis using MDL techniques.

Repository for "Data Mining - Advanced Topics and Applications" projects exam.

Python (3.8+) implementation of structural similarity and complementarity coefficients for undirected (un)weighted networks based on efficient counting of 2- and 3-paths (triples and quadruples) and 3- and 4-cycles (triangles and quadrangles).

Sequence Logo - block style is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.